J.M. Jumper, K.F. Freed, T.R. Sosnick, "Maximum-likelihood, self-consistent side chain free energies with applications to protein molecular dynamics" arXiv:1610.07277 [q-bio.BM].
M.C. Baxa, E.J. Haddadian, J.M. Jumper, K.F. Freed, T.R. Sosnick, "Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations" Proc Natl Acad Sci U S A 111 (2014) 15396-401.